Info • Podospora tetraspora CBS 815.71 v1.0

Status

[July 2022] The Podospora tetraspora CBS 815.71 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 31.46
Sequencing read coverage depth 203.42x
# of contigs 373
# of scaffolds 359
# of scaffolds >= 2Kbp 286
Scaffold N50 39
Scaffold L50 (Mbp) 0.25
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.93, 0.91, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36832 35428 96.2%
Ests est.fasta 65330888 64725052 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1889 1588
transcript 1720 1445
exon 615 388
intron 96 61
description:
protein length (aa) 486 390
exons per gene 2.80 2
# of gene models 10639


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vittorelli N, Rodríguez de la Vega RC, Snirc A, Levert E, Gautier V, Lalanne C, De Filippo E, Gladieux P, Guillou S, Zhang Y, Tejomurthula S, Grigoriev IV, Debuchy R, Silar P, Giraud T, Hartmann FE
Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores.
PLoS Genet. 2023 Feb;19(2):e1010347. doi: 10.1371/journal.pgen.1010347

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.