Info • Polyplosphaeria fusca CBS 125425 v1.0

Status

[Aug 2014] The Polyplosphaeria fusca genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Polyplosphaeria fusca CBS 125425 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.01
Sequencing read coverage depth 151x
# of contigs 593
# of scaffolds 468
# of scaffolds >= 2Kbp 415
Scaffold N50 58
Scaffold L50 (Mbp) 0.18
# of gaps 125
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.87, 0.78, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 27310 26660 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1626 1404
transcript 1494 1284
exon 555 358
intron 80 55
description:
protein length (aa) 429 355
exons per gene 2.69 2
# of gene models 15194


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.