Status
[June 2016] The Puccinia striiformis f. sp. tritici PST-78 was sequenced by the Broad Institute as part of their Fungal Genome Initiative and was imported into MycoCosm for comparative purposes. Please refer to the Broad's data usage policies if you use this genome in your analysis.
Summary statistics for the Puccinia striiformis f. sp.
tritici PST-78 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 117.31 |
| Sequencing read coverage depth | |
| # of contigs | 17295 |
| # of scaffolds | 9715 |
| # of scaffolds >= 2Kbp | 957 |
| Scaffold N50 | 66 |
| Scaffold L50 (Mbp) | 0.52 |
| # of gaps | 7580 |
| % of scaffold length in gaps | 32.4% |
| Three largest Scaffolds (Mbp) | 1.91, 1.86, 1.57 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 1661 | 1325 |
| transcript | 1329 | 1029 |
| exon | 309 | 180 |
| intron | 103 | 84 |
| description: | ||
| protein length (aa) | 372 | 278 |
| exons per gene | 4.29 | 3 |
| # of gene models | 20482 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Funding
This project was not sequenced at the JGI.
