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Info • Pycnoporellus fulgens PcyfulGre-SM17 v1.0

Status

[March 2020] The Pycnoporellus fulgens PcyfulGre-SM17 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pycnoporellus fulgens PcyfulGre-SM17 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.54
Sequencing read coverage depth 312.84x
# of contigs 64
# of scaffolds 64
# of scaffolds >= 2Kbp 64
Scaffold N50 13
Scaffold L50 (Mbp) 0.80
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.24, 2.14, 1.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 130362 128571 98.6%
Ests est.fasta 221973344 220973099 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1865 1612
transcript 1540 1313
exon 258 156
intron 67 55
description:
protein length (aa) 445 362
exons per gene 5.97 5
# of gene models 10740


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.