Info • Resinicium bicolor OMC78 v1.0

Status

[August 2019] The Resinicium bicolor OMC78 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Resinicium bicolor v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.51
Sequencing read coverage depth 481.44x
# of contigs 231
# of scaffolds 231
# of scaffolds >= 2Kbp 230
Scaffold N50 11
Scaffold L50 (Mbp) 1.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.16, 3.24, 3.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 74395 71215 95.7%
Ests est.fasta 93032668 92296082 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1872 1617
transcript 1496 1266
exon 234 141
intron 72 59
description:
protein length (aa) 432 349
exons per gene 6.40 5
# of gene models 13324


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.