Status
This genome was sequenced by Dong Wang, Rong Wu, Yan Xu and Ming Li in Key Laboratory of Industrial Biotechnology, Ministry of Education, State Key Laboratory of Food Science and Technology, School of Biotechnology, Jiangnan University, Wuxi, China. (Draft Genome Sequence of Rhizopus chinensis CCTCCM201021, Used for Brewing Traditional Chinese Alcoholic Beverages). Please check their data use policies.
Summary statistics for the Rhizopus microsporus var.
chinensis CCTCC M201021 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.74 |
| Sequencing read coverage depth | 97x |
| # of contigs | 3374 |
| # of scaffolds | 3281 |
| # of scaffolds >= 2Kbp | 2364 |
| Scaffold N50 | 463 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 93 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.29, 0.19, 0.17 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1555 | 1235 |
| transcript | 1317 | 1041 |
| exon | 290 | 166 |
| intron | 69 | 56 |
| description: | ||
| protein length (aa) | 439 | 347 |
| exons per gene | 4.53 | 4 |
| # of gene models | 17676 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wang D, Wu R, Xu Y, Li M
Draft Genome Sequence of Rhizopus chinensis CCTCCM201021, Used for Brewing Traditional Chinese Alcoholic Beverages.
Genome Announc. 2013 Feb 28;1(2):e0019512. doi: 10.1128/genomeA.00195-12
Wang D, Wu R, Xu Y, Li M
Draft Genome Sequence of Rhizopus chinensis CCTCCM201021, Used for Brewing Traditional Chinese Alcoholic Beverages.
Genome Announc. 2013 Feb 28;1(2):e0019512. doi: 10.1128/genomeA.00195-12
Funding
This project was not sequenced at the JGI.
