Status
[May 2022] The Rhizopus microsporus ATCC11559 v2.0 genome was
sequenced with PacBio, assembled with Flye and annotated with the
JGI Annotation Pipeline. The mitochondrial genome was assembled
separately and is available in the downloads section. Compared to
the v1.0,
which was sequenced with Illumina and assembled with AllPathsLG,
this updated version provides improved contiguity through long read
sequencing, reducing # scaffolds from 595 to
79.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.39 |
| Sequencing read coverage depth | 134.54x |
| # of contigs | 79 |
| # of scaffolds | 79 |
| # of scaffolds >= 2Kbp | 78 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 1.85 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.78, 2.70, 2.46 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 89070396 | 81642413 | 91.7% |
| Other | Trinity_assembled_Illumina_transcriptome | 64118 | 59073 | 92.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1667 | 1407 |
| transcript | 1431 | 1191 |
| exon | 318 | 191 |
| intron | 69 | 56 |
| description: | ||
| protein length (aa) | 418 | 333 |
| exons per gene | 4.50 | 4 |
| # of gene models | 10700 |
Collaborators
- Victoriano Garre, Universidad de Murcia, Spain
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mucoromycotina Mucorales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
