Info • Rhizopogon vesiculosus Smith

Status

This genome was sequenced at Oregon State Univesity, and not by the JGI.

Summary statistics for the Rhizopogon vesiculosus Smith release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.81
Sequencing read coverage depth
# of contigs 13804
# of scaffolds 6700
# of scaffolds >= 2Kbp 2771
Scaffold N50 388
Scaffold L50 (Mbp) 0.03
# of gaps 7104
% of scaffold length in gaps 3.3%
Three largest Scaffolds (Mbp) 0.45, 0.26, 0.21


Gene Models ExternalModels
length (bp) of: average median
gene 1468 1095
transcript 1157 860
exon 216 134
intron 73 55
description:
protein length (aa) 367 264
exons per gene 5.36 4
# of gene models 14218


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mujic AB, Kuo A, Tritt A, Lipzen A, Chen C, Johnson J, Sharma A, Barry K, Grigoriev IV, Spatafora JW
Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda). 2017 Jun 7;7(6):1775-1789. doi: 10.1534/g3.117.039396

Funding

This project was not sequenced at the JGI.