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Info • Rutstroemia firma CBS 115.86 v1.0

Status

[May 2015] The Rutstroemia firma genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rutstroemia firma CBS 115.86 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.27
Sequencing read coverage depth 81.9x
# of contigs 367
# of scaffolds 48
# of scaffolds >= 2Kbp 36
Scaffold N50 7
Scaffold L50 (Mbp) 2.94
# of gaps 319
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 4.88, 4.09, 3.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 31995 31462 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1716 1482
transcript 1544 1318
exon 521 327
intron 90 61
description:
protein length (aa) 440 360
exons per gene 2.96 2
# of gene models 13359


Collaborators

Jon Magnuson at the Pacific Northwest National Laboratory
Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.