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Info • Saccharomyces cerevisiae M3839 v1.0


The Saccharomyces cerevisiae M3839 genome was sequenced using the Illumina platform and assembled with AllPathsLG.

Summary statistics for the Saccharomyces cerevisiae M3839 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 11.55
Sequencing read coverage depth 165.5x
# of contigs 120
# of scaffolds 44
# of scaffolds >= 2Kbp 42
Scaffold N50 6
Scaffold L50 (Mbp) 0.68
# of gaps 76
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.47, 1.05, 1.03

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Illumina RNASeq assemblies 6134 5238 85.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1416 1164
transcript 1396 1149
exon 1281 1041
intron 222 97
protein length (aa) 457 377
exons per gene 1.09 1
# of gene models 5989

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.