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Info • Saccharata proteae CBS 121410 v1.0

Status

[March 2014] The Saccharata proteae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R44849 (Gnerre et al., 2010).
A 9.5 Kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Saccharata proteae CBS 121410 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.43
Sequencing read coverage depth 98.8x
# of contigs 727
# of scaffolds 245
# of scaffolds >= 2Kbp 195
Scaffold N50 9
Scaffold L50 (Mbp) 0.93
# of gaps 482
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 3.35, 2.63, 2.26


Gene Models FilteredModels1
length (bp) of: average median
gene 1612 1359
transcript 1403 1176
exon 456 247
intron 102 62
description:
protein length (aa) 468 392
exons per gene 3.08 3
# of gene models 9234


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.