Info • Scheffersomyces amazonensis UFMG-HMD-26.3 v1.0

Status

The Scheffersomyces amazonensis UFMG-HMD-26.3 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 14.21
Sequencing read coverage depth 291.4x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 3
Scaffold L50 (Mbp) 2.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.35, 3.26, 2.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 9757 8823 90.4%
Ests est.fasta 126117304 125858962 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1783 1527
transcript 1750 1511
exon 1506 1331
intron 206 92
description:
protein length (aa) 509 429
exons per gene 1.16 1
# of gene models 6071


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.