Info • Scheffersomyces lignicola CBS10612T v1.0

Status

The Scheffersomyces lignicola CBS10612T v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 12.90
Sequencing read coverage depth 292.8x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 4
Scaffold L50 (Mbp) 1.69
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.30, 2.08, 1.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 14394 9658 67.1%
Ests est.fasta 124331732 122023953 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1754 1523
transcript 1729 1507
exon 1502 1332
intron 169 76
description:
protein length (aa) 502 424
exons per gene 1.15 1
# of gene models 5860


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.