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Info • Schizosaccharomyces pombe

Status

[Jan 2013]
The genome sequence and gene prediction of Schizosaccharomyces pombe were not determined by the JGI, but was downloaded from www.pombase.org. Please note that this copy of the genome is not maintained by pombase and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome, but includes the telommeric contig and matig type contig in addition to the three chromosomes. The JGI Annotation Pipeline was used to add additional functional annotation to the known and predicted proteins.

Summary statistics for the Schizosaccharomyces pombe [Release Version: 11th Sep 2012] release are below.
Genome Assembly
Genome Assembly size (Mbp} 12.61
Sequencing read coverage depth ?
# of contigs 9
# of scaffolds 3+2
# of scaffolds >= 2Kbp 5
Scaffold N50 2
Scaffold L50 (Mbp) 4.54
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.58, 4.54, 2.45


Gene Models ExternalModels
length (bp) of: average median
gene 2147 1888
transcript 2062 1795
exon 1014 498
intron 85 58
description:
protein length (aa) 465 379
exons per gene 2.03 1
# of gene models 5134


Genome Reference(s)

Funding

This project was not sequenced at the JGI.