Status
[Jan 2013]
The genome sequence and gene prediction of Schizosaccharomyces
pombe were not determined by the JGI, but was downloaded from
www.pombase.org. Please note
that this copy of the genome is not maintained by pombase and is
therefore not automatically updated. This copy of the genome does
not include the mitochondrial chromosome, but includes the
telommeric contig and matig type contig in addition to the three
chromosomes. The JGI Annotation Pipeline was used to add additional
functional annotation to the known and predicted proteins.
Summary statistics for the Schizosaccharomyces pombe
[Release Version: 11th Sep 2012] release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 12.61 |
| Sequencing read coverage depth | ? |
| # of contigs | 9 |
| # of scaffolds | 3+2 |
| # of scaffolds >= 2Kbp | 5 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 4.54 |
| # of gaps | 4 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.58, 4.54, 2.45 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2147 | 1888 |
| transcript | 2062 | 1795 |
| exon | 1014 | 498 |
| intron | 85 | 58 |
| description: | ||
| protein length (aa) | 465 | 379 |
| exons per gene | 2.03 | 1 |
| # of gene models | 5134 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S, Basham D, Bowman S, Brooks K, Brown D, Brown S, Chillingworth T, Churcher C, Collins M, Connor R, Cronin A, Davis P, Feltwell T, Fraser A, Gentles S, Goble A, Hamlin N, Harris D, Hidalgo J, Hodgson G, Holroyd S, Hornsby T, Howarth S, Huckle EJ, Hunt S, Jagels K, James K, Jones L, Jones M, Leather S, McDonald S, McLean J, Mooney P, Moule S, Mungall K, Murphy L, Niblett D, Odell C, Oliver K, O'Neil S, Pearson D, Quail MA, Rabbinowitsch E, Rutherford K, Rutter S, Saunders D, Seeger K, Sharp S, Skelton J, Simmonds M, Squares R, Squares S, Stevens K, Taylor K, Taylor RG, Tivey A, Walsh S, Warren T, Whitehead S, Woodward J, Volckaert G, Aert R, Robben J, Grymonprez B, Weltjens I, Vanstreels E, Rieger M, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Düsterhöft A, Fritzc C, Holzer E, Moestl D, Hilbert H, Borzym K, Langer I, Beck A, Lehrach H, Reinhardt R, Pohl TM, Eger P, Zimmermann W, Wedler H, Wambutt R, Purnelle B, Goffeau A, Cadieu E, Dréano S, Gloux S, Lelaure V, Mottier S, Galibert F, Aves SJ, Xiang Z, Hunt C, Moore K, Hurst SM, Lucas M, Rochet M, Gaillardin C, Tallada VA, Garzon A, Thode G, Daga RR, Cruzado L, Jimenez J, Sánchez M, del Rey F, Benito J, DomÃnguez A, Revuelta JL, Moreno S, Armstrong J, Forsburg SL, Cerutti L, Lowe T, McCombie WR, Paulsen I, Potashkin J, Shpakovski GV, Ussery D, Barrell BG, Nurse P
The genome sequence of Schizosaccharomyces pombe.
Nature. 2002 Feb 21;415(6874):871-80. doi: 10.1038/nature724
Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, Aslett M, Lock A, Bähler J, Kersey PJ, Oliver SG
PomBase: a comprehensive online resource for fission yeast.
Nucleic Acids Res. 2012 Jan;40(Database issue):D695-9. doi: 10.1093/nar/gkr853
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, Sgouros J, Peat N, Hayles J, Baker S, Basham D, Bowman S, Brooks K, Brown D, Brown S, Chillingworth T, Churcher C, Collins M, Connor R, Cronin A, Davis P, Feltwell T, Fraser A, Gentles S, Goble A, Hamlin N, Harris D, Hidalgo J, Hodgson G, Holroyd S, Hornsby T, Howarth S, Huckle EJ, Hunt S, Jagels K, James K, Jones L, Jones M, Leather S, McDonald S, McLean J, Mooney P, Moule S, Mungall K, Murphy L, Niblett D, Odell C, Oliver K, O'Neil S, Pearson D, Quail MA, Rabbinowitsch E, Rutherford K, Rutter S, Saunders D, Seeger K, Sharp S, Skelton J, Simmonds M, Squares R, Squares S, Stevens K, Taylor K, Taylor RG, Tivey A, Walsh S, Warren T, Whitehead S, Woodward J, Volckaert G, Aert R, Robben J, Grymonprez B, Weltjens I, Vanstreels E, Rieger M, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Düsterhöft A, Fritzc C, Holzer E, Moestl D, Hilbert H, Borzym K, Langer I, Beck A, Lehrach H, Reinhardt R, Pohl TM, Eger P, Zimmermann W, Wedler H, Wambutt R, Purnelle B, Goffeau A, Cadieu E, Dréano S, Gloux S, Lelaure V, Mottier S, Galibert F, Aves SJ, Xiang Z, Hunt C, Moore K, Hurst SM, Lucas M, Rochet M, Gaillardin C, Tallada VA, Garzon A, Thode G, Daga RR, Cruzado L, Jimenez J, Sánchez M, del Rey F, Benito J, DomÃnguez A, Revuelta JL, Moreno S, Armstrong J, Forsburg SL, Cerutti L, Lowe T, McCombie WR, Paulsen I, Potashkin J, Shpakovski GV, Ussery D, Barrell BG, Nurse P
The genome sequence of Schizosaccharomyces pombe.
Nature. 2002 Feb 21;415(6874):871-80. doi: 10.1038/nature724
Wood V, Harris MA, McDowall MD, Rutherford K, Vaughan BW, Staines DM, Aslett M, Lock A, Bähler J, Kersey PJ, Oliver SG
PomBase: a comprehensive online resource for fission yeast.
Nucleic Acids Res. 2012 Jan;40(Database issue):D695-9. doi: 10.1093/nar/gkr853
Funding
This project was not sequenced at the JGI.
