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Info • Scheffersomyces queiroziae UFMG-CLM-5.1 v1.0

Status

[March 2018] The Scheffersomyces queiroziae UFMG-CLM-5.1 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Scheffersomyces queiroziae UFMG-CLM-5.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.31
Sequencing read coverage depth 275.78x
# of contigs 14
# of scaffolds 14
# of scaffolds >= 2Kbp 12
Scaffold N50 4
Scaffold L50 (Mbp) 1.97
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.51, 2.22, 2.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 9239 7957 86.1%
Ests est.fasta 158322670 157261159 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1788 1557
transcript 1756 1533
exon 1481 1311
intron 172 86
description:
protein length (aa) 510 432
exons per gene 1.19 1
# of gene models 5964


Collaborators

Chris Hittinger, U. of Wisconsin-Madison, WI

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.