Info • Scheffersomyces xylosifermentans CBS12540T v1.0

Status

The Scheffersomyces xylosifermentans CBS12540T v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 17.25
Sequencing read coverage depth 181.0x
# of contigs 11
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 3
Scaffold L50 (Mbp) 2.38
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.65, 2.77, 2.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 14587 9790 67.1%
Ests est.fasta 159140701 158676929 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1824 1575
transcript 1781 1547
exon 1432 1246
intron 180 91
description:
protein length (aa) 506 423
exons per gene 1.24 1
# of gene models 6180


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Barros Katharina O., Mader Megan, Krause David J., Pangilinan Jasmyn, Andreopoulos Bill, Lipzen Anna, Mondo Stephen J., Grigoriev Igor V., Rosa Carlos A., Sato Trey K., Hittinger Chris Todd
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces
Biotechnol Biofuels. 2024;17(1): doi: 10.1186/s13068-024-02467-8

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.