Status
The genome sequence and gene models of Sclerotinia borealis F-4128 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Sclerotinia borealis F4128 are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.45 |
| Sequencing read coverage depth | 23x |
| # of contigs | 1555 |
| # of scaffolds | 1241 |
| # of scaffolds >= 2Kbp | 651 |
| Scaffold N50 | 88 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 314 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.59, 0.54, 0.50 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1733 | 1433 |
| transcript | 1528 | 1251 |
| exon | 492 | 262 |
| intron | 99 | 62 |
| description: | ||
| protein length (aa) | 509 | 417 |
| exons per gene | 3.11 | 3 |
| # of gene models | 10166 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Mardanov AV, Beletsky AV, Kadnikov VV, Ignatov AN, Ravin NV
Draft Genome Sequence of Sclerotinia borealis, a Psychrophilic Plant Pathogenic Fungus.
Genome Announc. 2014 Jan 23;2(1):. doi: 10.1128/genomeA.01175-13
Mardanov AV, Beletsky AV, Kadnikov VV, Ignatov AN, Ravin NV
Draft Genome Sequence of Sclerotinia borealis, a Psychrophilic Plant Pathogenic Fungus.
Genome Announc. 2014 Jan 23;2(1):. doi: 10.1128/genomeA.01175-13
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes Helotiales
Funding
This project was not sequenced at the JGI.
