Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Sclerotinia sclerotiorum v1.0

Status

The genome of Sclerotinia sclerotiorum was not sequenced by the JGI, but by the BROAD Institute. A copy of the genome was downloaded from http://www.broadinstitute.org/annotation/genome/sclerotinia_sclerotiorum/MultiHome.html and is incorporated into MycoCosm so it can be used in comparative studies. JGI eukaryotic tools were used to annotate the predicted genes.

Summary statistics for the Sclerotinia sclerotiorum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.33
Sequencing read coverage depth unknown
# of contigs 679
# of scaffolds 37
# of scaffolds >= 2Kbp 37
Scaffold N50 9
Scaffold L50 (Mbp) 1.55
# of gaps 642
% of scaffold length in gaps 0.90%
Three largest Scaffolds (Mbp) 2.78, 2.72, 2.63


Gene Models ExternalModels
length (bp) of: average median
gene 1342 1069
transcript 1092 819
exon 390 182
intron 141 80
description:
protein length (aa) 363 272
exons per gene 2.80 2
# of gene models 14503


Genome Reference(s)

Funding

This project was not sequenced at the JGI.