Info • Scytinostroma sp. KUC9335 v1.0


(Aug 2016) The Scytinostroma sp. KUC9335 genome was sequenced using PacBio RS RnD 1 x 240 bp 7.829 kb. Each fastq file was QC filtered for artifact/process contamination and subsequently assembled together with Falcon version 0.2.2 to produce a main assembly with 597 scaffolds.

The JGI annotation pipeline identified some gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Scytinostroma sp. KUC9413 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.64
Sequencing read coverage depth N/A
# of contigs 597
# of scaffolds 597
# of scaffolds >= 2Kbp 591
Scaffold N50 50
Scaffold L50 (Mbp) 0.33
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.60, 1.67, 1.15

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 92423024 91346553 98.8%
Other JGI_RNA_contigs 50532 48920 96.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1737 1462
transcript 1424 1193
exon 252 155
intron 69 56
protein length (aa) 408 328
exons per gene 5.66 4
# of gene models 14908


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.