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Info • Septoria populicola v1.0

Status

The genome of Septoria populicola was not sequenced by the Joint Genome Institute, but by Phil Tanguay (Research Scientist), Laurentian Forestry Centre (Canadian Forest Service), Succ.Sainte-Foy (Quebec) and Richard Hamelin (University of British Columbia, Canada) using Illumina technology. The reads were assembled with Newbler. The JGI fungal genome annotation pipeline was used to predict and annotate genes and other genomic features. Since no ESTs are available for S. populicola, ESTs from the closely related species S. musiva were used to assist in gene prediction.

Summary statistics for the Septoria populicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 33.19
Sequencing read coverage depth 18x
# of contigs 2827
# of scaffolds 502
# of scaffolds >= 2Kbp 502
Scaffold N50 41
Scaffold L50 (Mbp) 0.26
# of gaps 2325
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 1.07, 0.90, 0.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_Sepmu1 10652 5521 51.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1572 1314
transcript 1408 1161
exon 557 260
intron 109 68
description:
protein length (aa) 449 367
exons per gene 2.53 2
# of gene models 9739


Collaborators

Genome Reference(s)

Funding

This project was not sequenced at the JGI.