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Info • Setosphaeria turcica NY001 v2.0

Status

[September 2017] [Aug 2017] The Setosphaeria turcica genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010) in July 2015. This is an updated annotation of the same assembly using RNA-seq reads from various growth conditions to improve gene calling.
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Setosphaeria turcica NY001 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.42
Sequencing read coverage depth 58.1x
# of contigs 1823
# of scaffolds 489
# of scaffolds >= 2Kbp 417
Scaffold N50 45
Scaffold L50 (Mbp) 0.23
# of gaps 1334
% of scaffold length in gaps 6.0%
Three largest Scaffolds (Mbp) 1.75, 1.20, 0.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34363 31396 91.4%
Ests est.fasta 472709595 167488904 35.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1625 1373
transcript 1496 1254
exon 581 364
intron 84 58
description:
protein length (aa) 439 355
exons per gene 2.58 2
# of gene models 12547


Collaborators

Gillian Turgeon, Cornell University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.