Info • Sporidiobolus pararoseus UCDFST 68-350 v1.0

Status

[Feb 2016] The Sporidiobolus pararoseus genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011). Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Sporidiobolus pararoseus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.10
Sequencing read coverage depth 123.5x
# of contigs 332
# of scaffolds 319
# of scaffolds >= 2Kbp 266
Scaffold N50 34
Scaffold L50 (Mbp) 0.19
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.52, 0.46, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24582 23416 95.3%
Ests est.fasta 143994873 122999095 85.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2073 1775
transcript 1687 1432
exon 291 180
intron 83 73
description:
protein length (aa) 483 390
exons per gene 5.80 5
# of gene models 8378


Collaborators

Kyria Boundy-Mills, University of California - Davis
Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.