Info • Sporothrix schenckii 1099-18


The Sporothrix schenckii 1099-18 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 32.35
Sequencing read coverage depth
# of contigs 15
# of scaffolds 15
# of scaffolds >= 2Kbp 15
Scaffold N50 3
Scaffold L50 (Mbp) 4.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.37, 5.65, 4.34

Gene Models ExternalModels
length (bp) of: average median
gene 1613 1362
transcript 1523 1272
exon 760 397
intron 91 76
protein length (aa) 508 424
exons per gene 2.00 2
# of gene models 10277

Genome Reference(s)


This project was not sequenced at the JGI.