Info • Suillus granulatus EM37 v1.0

Status

Assembly v1 (March 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.

Summary statistics for the Suillus granulatus EM37 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.34
Sequencing read coverage depth 80.3x
# of contigs 1869
# of scaffolds 628
# of scaffolds >= 2Kbp 419
Scaffold N50 24
Scaffold L50 (Mbp) 0.51
# of gaps 1241
% of scaffold length in gaps 4.0%
Three largest Scaffolds (Mbp) 2.10, 2.09, 1.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 44012 42010 95.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1595 1324
transcript 1298 1054
exon 234 146
intron 67 55
description:
protein length (aa) 379 295
exons per gene 5.55 4
# of gene models 15802


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.