Info • Talaromyces borbonicus CBS 141340

Status

Talaromyces borbonicus CBS 141340 was sequenced by University of Naples “Federico II” using Illumina HiSeq2500, and annotated with software Glimmer v3.02 and CodingQuarry which integrated mRNA-Seq evidence to improve gene prediction.

Summary statistics for the Talaromyces borboniensis CBS 141340 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.05
Sequencing read coverage depth
# of contigs 121
# of scaffolds 28
# of scaffolds >= 2Kbp 23
Scaffold N50 5
Scaffold L50 (Mbp) 2.20
# of gaps 93
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.30, 3.17, 2.69


Gene Models ExternalModels
length (bp) of: average median
gene 1700 1418
transcript 1481 1239
exon 525 291
intron 122 71
description:
protein length (aa) 494 413
exons per gene 2.82 2
# of gene models 9744


Collaborators

Vincenza Faraco, Simona Varriale, Gabriella Cerullo, Department of Chemical sciences, University of Naples Federico II

Olimpia Pepe, Valeria Ventorino, Department of Agriculture, University of Naples Federico II

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Varriale S, Houbraken J, Granchi Z, Pepe O, Cerullo G, Ventorino V, Chin-A-Woeng T, Meijer M, Riley R, Grigoriev IV, Henrissat B, de Vries RP, Faraco V
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.
Mycologia. 2018 Mar-Apr;110(2):316-324. doi: 10.1080/00275514.2018.1456835

Funding

This project was not sequenced at the JGI.