Info • Terfezia claveryi T7 v1.0

Status

[January 2017] The Terfezia claveryi T7 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Terfezia claveryi T7 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 74.47
Sequencing read coverage depth 79.23x
# of contigs 1139
# of scaffolds 1139
# of scaffolds >= 2Kbp 1105
Scaffold N50 85
Scaffold L50 (Mbp) 0.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.13, 1.05, 0.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 119860 89639 74.8%
Ests est.fasta 256858112 242939939 94.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1525 1252
transcript 1325 1044
exon 408 240
intron 91 64
description:
protein length (aa) 377 278
exons per gene 3.25 3
# of gene models 12765


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.