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Info • Thamnocephalis sphaerospora RSA 1356 single-cell v1.0


[Mar 2016] The assembly was generated using four 50-cell and five 1-cell Illumina libraries. Only scaffolds >2kb were assembled with SPAdes v3.6.0.

Summary statistics for the Thamnocephalis sphaerospora RSA 1356 single-cell v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.20
Sequencing read coverage depth 1.0x
# of contigs 1408
# of scaffolds 1385
# of scaffolds >= 2Kbp 1385
Scaffold N50 237
Scaffold L50 (Mbp) 0.02
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.11, 0.10, 0.10

Gene Models FilteredModels1
length (bp) of: average median
gene 1510 1246
transcript 1193 972
exon 252 141
intron 87 71
protein length (aa) 398 324
exons per gene 4.73 4
# of gene models 6857


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.