Info • Thelephora ganbajun P2 v1.0

Status

Assembly v1 (December 2014) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Thelephora ganbajun P2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.34
Sequencing read coverage depth 176.8x
# of contigs 2373
# of scaffolds 1241
# of scaffolds >= 2Kbp 952
Scaffold N50 79
Scaffold L50 (Mbp) 0.11
# of gaps 1132
% of scaffold length in gaps 3.1%
Three largest Scaffolds (Mbp) 0.81, 0.73, 0.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 79172 72189 91.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1631 1350
transcript 1342 1095
exon 257 161
intron 71 58
description:
protein length (aa) 385 301
exons per gene 5.22 4
# of gene models 12643


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.