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Info • Tilletiopsis sp. TKC30 v1.0

Status

[July 2017] The Tilletiopsis sp. TKC30 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Tilletiopsis sp. TKC30 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.94
Sequencing read coverage depth 128.8x
# of contigs 53
# of scaffolds 53
# of scaffolds >= 2Kbp 53
Scaffold N50 12
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.32, 1.40, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 22595 21048 93.2%
Ests est.fasta 112126948 111141207 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2252 1948
transcript 1803 1522
exon 435 257
intron 145 113
description:
protein length (aa) 531 436
exons per gene 4.14 4
# of gene models 9728


Collaborators

Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.