Status
The genome sequence and gene models of Tolypocladium inflatum NRRL 8044 were not determined by the JGI, rather they were acquired from Jason Stajich in June, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Stajich lab and is therefore not automatically updated.
Summary statistics for the Tolypocladium inflatum NRRL
8044 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.35 |
| Sequencing read coverage depth | NA |
| # of contigs | 188 |
| # of scaffolds | 101 |
| # of scaffolds >= 2Kbp | 101 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.51 |
| # of gaps | 87 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.56, 2.34, 2.14 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1667 | 1382 |
| transcript | 1538 | 1263 |
| exon | 582 | 342 |
| intron | 80 | 61 |
| description: | ||
| protein length (aa) | 498 | 406 |
| exons per gene | 2.64 | 2 |
| # of gene models | 9998 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Bushley KE, Raja R, Jaiswal P, Cumbie JS, Nonogaki M, Boyd AE, Owensby CA, Knaus BJ, Elser J, Miller D, Di Y, McPhail KL, Spatafora JW
The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.
PLoS Genet. 2013 Jun;9(6):e1003496. doi: 10.1371/journal.pgen.1003496
Bushley KE, Raja R, Jaiswal P, Cumbie JS, Nonogaki M, Boyd AE, Owensby CA, Knaus BJ, Elser J, Miller D, Di Y, McPhail KL, Spatafora JW
The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.
PLoS Genet. 2013 Jun;9(6):e1003496. doi: 10.1371/journal.pgen.1003496
Funding
This project was not sequenced at the JGI.
