Info • Tothia fuscella CBS 130266 v1.0

Status

[Oct 2014] The Tothia fuscella genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Tothia fuscella CBS 130266 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.78
Sequencing read coverage depth 146.8x
# of contigs 687
# of scaffolds 363
# of scaffolds >= 2Kbp 297
Scaffold N50 34
Scaffold L50 (Mbp) 0.32
# of gaps 324
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 1.28, 0.96, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 28964 28603 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1626 1395
transcript 1483 1263
exon 530 336
intron 81 59
description:
protein length (aa) 421 340
exons per gene 2.80 2
# of gene models 13685


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.