Info • Triparticalcar arcticum BR59 v1.0

Status

[May 2018] The Triparticalcar arcticum BR59 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Triparticalcar arcticum BR59 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.55
Sequencing read coverage depth 382.09x
# of contigs 103
# of scaffolds 103
# of scaffolds >= 2Kbp 102
Scaffold N50 12
Scaffold L50 (Mbp) 0.86
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.97, 1.76, 1.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41894 39178 93.5%
Ests est.fasta 294603689 95100872 32.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1791 1488
transcript 1573 1282
exon 370 195
intron 69 61
description:
protein length (aa) 451 346
exons per gene 4.26 3
# of gene models 10963


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.