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Info • Trichoderma arundinaceum IBT 40837

Status

The genome sequence and gene models of Trichoderma arundinaceum IBT 40837 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Dec 4, 2018 and annotation provided by the authors. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Trichoderma arundinaceum IBT 40837 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.87
Sequencing read coverage depth 50
# of contigs 1428
# of scaffolds 1370
# of scaffolds >= 2Kbp 1103
Scaffold N50 171
Scaffold L50 (Mbp) 0.06
# of gaps 58
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.27, 0.23, 0.23


Gene Models ExternalModels
length (bp) of: average median
gene 1706 1386
transcript 1523 1236
exon 549 307
intron 106 69
description:
protein length (aa) 508 412
exons per gene 2.77 2
# of gene models 10473


Genome Reference(s)

Funding

This project was not sequenced at the JGI.