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Info • Trichoderma atroviride B10 v1.0

Status

[November 2018] The Trichoderma atroviride B10 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Summary statistics for the Trichoderma atroviride B10 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.33
Sequencing read coverage depth 173.4x
# of contigs 32
# of scaffolds 32
# of scaffolds >= 2Kbp 32
Scaffold N50 6
Scaffold L50 (Mbp) 2.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.15, 3.86, 3.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40279 37675 93.5%
Ests est.fasta 222840940 221397553 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1861 1608
transcript 1680 1443
exon 590 365
intron 100 69
description:
protein length (aa) 475 389
exons per gene 2.85 2
# of gene models 11909


Collaborators

Mateo Lorito - Università di Napoli Federico II

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.