Status
[Jan 2015] The Trichosporon chiarellii MYA-4694 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .
Summary statistics for the Trichosporon chiarellii
MYA-4694 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 24.81 |
| Sequencing read coverage depth | 86.7 |
| # of contigs | 82 |
| # of scaffolds | 7 |
| # of scaffolds >= 2Kbp | 7 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 4.45 |
| # of gaps | 75 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 6.09, 4.48, 4.45 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 13547 | 13459 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2059 | 1830 |
| transcript | 1702 | 1458 |
| exon | 383 | 211 |
| intron | 105 | 63 |
| description: | ||
| protein length (aa) | 495 | 415 |
| exons per gene | 4.45 | 4 |
| # of gene models | 7766 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Laboratory
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
