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Info • Trichosporon chiarellii MYA-4694 v1.0

Status

[Jan 2015] The Trichosporon chiarellii MYA-4694 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .

Summary statistics for the Trichosporon chiarellii MYA-4694 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.81
Sequencing read coverage depth 86.7
# of contigs 82
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 4.45
# of gaps 75
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.09, 4.48, 4.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 13547 13459 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2059 1830
transcript 1702 1458
exon 383 211
intron 105 63
description:
protein length (aa) 495 415
exons per gene 4.45 4
# of gene models 7766


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.