Info • Trichophyton equinum CBS 127.97

Status

The genome sequence and gene models of Trichophyton equinum CBS 127.97 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 24.16
Sequencing read coverage depth
# of contigs 1716
# of scaffolds 125
# of scaffolds >= 2Kbp 124
Scaffold N50 22
Scaffold L50 (Mbp) 0.40
# of gaps 1591
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.22, 0.95, 0.80


Gene Models ExternalModels
length (bp) of: average median
gene 1593 1321
transcript 1384 1137
exon 436 232
intron 98 70
description:
protein length (aa) 457 374
exons per gene 3.17 3
# of gene models 8676


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, Kosti I, Rossi A, Saif S, Samalova M, Saunders CW, Shea T, Summerbell RC, Xu J, Young S, Zeng Q, Birren BW, Cuomo CA, White TC
Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection.
mBio. 2012;3(5):e00259-12. doi: 10.1128/mBio.00259-12

Funding

This project was not sequenced at the JGI.