Status
The genome sequence and gene models of Trichophyton interdigitale MR816 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Genome Assembly | |
Genome Assembly size (Mbp) | 22.47 |
Sequencing read coverage depth | |
# of contigs | 956 |
# of scaffolds | 956 |
# of scaffolds >= 2Kbp | 716 |
Scaffold N50 | 120 |
Scaffold L50 (Mbp) | 0.06 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.23, 0.19, 0.17 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1696 | 1440 |
transcript | 1534 | 1284 |
exon | 506 | 269 |
intron | 82 | 68 |
description: | ||
protein length (aa) | 494 | 412 |
exons per gene | 3.03 | 3 |
# of gene models | 8282 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA
Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.
Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573
Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA
Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.
Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Onygenales
Funding
This project was not sequenced at the JGI.