Info • Trichophyton interdigitale MR816

Status

The genome sequence and gene models of Trichophyton interdigitale MR816 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 22.47
Sequencing read coverage depth
# of contigs 956
# of scaffolds 956
# of scaffolds >= 2Kbp 716
Scaffold N50 120
Scaffold L50 (Mbp) 0.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.23, 0.19, 0.17


Gene Models ExternalModels
length (bp) of: average median
gene 1696 1440
transcript 1534 1284
exon 506 269
intron 82 68
description:
protein length (aa) 494 412
exons per gene 3.03 3
# of gene models 8282


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA
Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.
Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573

Funding

This project was not sequenced at the JGI.