Info • Trichomonascus petasosporus NRRL YB-2093 v1.0


[Jan 2015] The Trichomonascus petasosporus genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trichomonascus petasosporus NRRL YB-2093 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.46
Sequencing read coverage depth 91.9x
# of contigs 175
# of scaffolds 79
# of scaffolds >= 2Kbp 56
Scaffold N50 5
Scaffold L50 (Mbp) 1.23
# of gaps 96
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 1.68, 1.57, 1.57

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 10876 10300 94.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1533 1308
transcript 1487 1275
exon 998 815
intron 94 49
protein length (aa) 436 362
exons per gene 1.49 1
# of gene models 6567



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.