Info • Trichoderma reesei v2.0
Status

v.2.0 (October 18, 2006): The assembly release version 2.0 combines JAZZ assembly of whole genome shotgun reads with additional reads provided by the finishing group at the Los Alamos National Laboratory Branch of the Joint Genome Institute. This additional information has reduced the overall number of scaffolds from 1094 (v1.0) to 89 (v2.0). In addition, the number of scaffolds that make up half of the 34.1 Mb of the genome has reduced to 9 in v2.0 versus 15 in v1.0. Finishing work continues at JGI/LANL.

The current draft release, version 2.0, includes a total of 9,129 gene models predicted and annotated using the JGI annotation pipeline. Community-wide manual curation of gene models is on-going.

 
Collaborators
 
References
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barbote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS. (2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei. Nat Biotechnol. 26, 553-560.
 
Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory under Contract No. W-7405-Eng-48, Lawrence Berkeley National Laboratory under contract No. DE-AC03-76SF00098 and Los Alamos National Laboratory under contract No. W-7405-ENG-36.