Info • Trichoderma rossicum M135 v1.0

Status

[June 2022] The Trichoderma rossicum M135 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.94
Sequencing read coverage depth 60x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 6.85
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.60, 7.19, 6.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55838 50791 91.0%
Ests est.fasta 398337365 395798747 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1929 1667
transcript 1766 1511
exon 619 385
intron 90 67
description:
protein length (aa) 488 396
exons per gene 2.85 2
# of gene models 12256


Collaborators

  • Patrick Chain - Los Alamos National Laboratory (LANL), New Mexico, USA.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.