Info • Trichophyton soudanense CBS 452.61

Status

The genome sequence and gene models of Trichophyton soudanense CBS 452.61 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 22.85
Sequencing read coverage depth
# of contigs 420
# of scaffolds 420
# of scaffolds >= 2Kbp 328
Scaffold N50 42
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.60, 0.54, 0.53


Gene Models ExternalModels
length (bp) of: average median
gene 1745 1455
transcript 1606 1311
exon 584 308
intron 82 68
description:
protein length (aa) 447 368
exons per gene 2.75 2
# of gene models 10671


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA
Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.
Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573

Funding

This project was not sequenced at the JGI.