Info • Tuber melosporum Tmelo v1.0

Status

[October 2020] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Tuber melosporum Tmelo v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 114.20
Sequencing read coverage depth 72.47x
# of contigs 164
# of scaffolds 164
# of scaffolds >= 2Kbp 164
Scaffold N50 19
Scaffold L50 (Mbp) 2.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.39, 4.37, 4.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 148065274 140762807 95.1%
Other JGI_RNA_contigs 106930 89989 84.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1527 1266
transcript 1297 1053
exon 380 240
intron 97 65
description:
protein length (aa) 374 280
exons per gene 3.41 3
# of gene models 14017


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.