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Info • Tulasnella sp. 419 v1.0

Status

[June 2021] The Tulasnella sp. 419 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Genome Assembly
Genome Assembly size (Mbp) 56.29
Sequencing read coverage depth 161.62x
# of contigs 217
# of scaffolds 217
# of scaffolds >= 2Kbp 217
Scaffold N50 11
Scaffold L50 (Mbp) 1.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.84, 3.72, 3.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 79128 75960 96.0%
Ests est.fasta 173502258 171654081 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1950 1680
transcript 1574 1338
exon 236 147
intron 68 59
description:
protein length (aa) 457 368
exons per gene 6.68 6
# of gene models 13314


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.