Info • Umbelopsis sp. PMI_123 v1.0

Status

[July 2019] The Umbelopsis sp. PMI_123 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Umbelopsis sp. PMI_123 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.64
Sequencing read coverage depth 185.48x
# of contigs 38
# of scaffolds 38
# of scaffolds >= 2Kbp 37
Scaffold N50 8
Scaffold L50 (Mbp) 0.99
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.63, 2.59, 1.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44170 42336 95.8%
Ests est.fasta 108887622 106435386 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1858 1611
transcript 1533 1326
exon 309 186
intron 84 74
description:
protein length (aa) 440 363
exons per gene 4.96 4
# of gene models 9672


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.