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Info • Urocystis primulicola RUB 030670 v1.0

Status

[March 2018] The Urocystis primulicola RUB 030670 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Urocystis primulicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 13.82
Sequencing read coverage depth 703.53x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 26
Scaffold N50 9
Scaffold L50 (Mbp) 0.62
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.12, 1.11, 0.93


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 18710 16188 86.5%
Ests est.fasta 81101333 79697279 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1909 1611
transcript 1794 1497
exon 708 324
intron 77 59
description:
protein length (aa) 537 435
exons per gene 2.54 2
# of gene models 5998


Collaborators

Dominik Begerow, Ruhr-Universität Bochum.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.