Status
[April 2017] The genome of Ustilago hordei was not sequenced at JGI. Rather, the assembly and gene models were imported from Genbank on April 6th, 2017. Please cite Laurie et al., 2012 if you use these data in your study.
Summary statistics for Ustilago hordei Uh4857_4 are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 21.15 |
| Sequencing read coverage depth | |
| # of contigs | 2739 |
| # of scaffolds | 713 |
| # of scaffolds >= 2Kbp | 159 |
| Scaffold N50 | 30 |
| Scaffold L50 (Mbp) | 0.31 |
| # of gaps | 2026 |
| % of scaffold length in gaps | 4.8% |
| Three largest Scaffolds (Mbp) | 0.54, 0.42, 0.40 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1782 | 1437 |
| transcript | 1705 | 1359 |
| exon | 1103 | 609 |
| intron | 143 | 100 |
| description: | ||
| protein length (aa) | 568 | 453 |
| exons per gene | 1.55 | 1 |
| # of gene models | 7110 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Laurie JD, Ali S, Linning R, Mannhaupt G, Wong P, Güldener U, Münsterkötter M, Moore R, Kahmann R, Bakkeren G, Schirawski J
Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements.
Plant Cell. 2012 May;24(5):1733-45. doi: 10.1105/tpc.112.097261
Laurie JD, Ali S, Linning R, Mannhaupt G, Wong P, Güldener U, Münsterkötter M, Moore R, Kahmann R, Bakkeren G, Schirawski J
Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements.
Plant Cell. 2012 May;24(5):1733-45. doi: 10.1105/tpc.112.097261
Funding
This project was not sequenced at the JGI.
