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Info • Vararia minispora EC-137 v1.0

Status

(Mar 2016) The Vararia minispora EC-137 genome was sequenced using the Illumina platform, assembled with AllPathsLG version R42328, and annotated with the JGI annotation pipeline.

Summary statistics for the Vararia minispora EC-137 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.81
Sequencing read coverage depth 149.8
# of contigs 1675
# of scaffolds 1435
# of scaffolds >= 2Kbp 1137
Scaffold N50 127
Scaffold L50 (Mbp) 0.08
# of gaps 240
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.44, 0.39, 0.35


Gene Models FilteredModels1
length (bp) of: average median
gene 1621 1353
transcript 1282 1050
exon 220 141
intron 72 56
description:
protein length (aa) 427 350
exons per gene 5.82 5
# of gene models 10962


Collaborators

Joseph W. Spatafora, Oregon State University

Daniel L. Lindner, US Forest Service, Center for Forest Mycology Research

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.