Info • Wickerhamiella domercqiae NRRL Y-6692 v1.0


[August 2016] The Wickerhamiella domercqiae Y-6692 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Wickerhamiella domercqiae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 8.43
Sequencing read coverage depth 85.9x
# of contigs 49
# of scaffolds 28
# of scaffolds >= 2Kbp 24
Scaffold N50 3
Scaffold L50 (Mbp) 0.98
# of gaps 21
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 2.22, 1.57, 0.98

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 5941 3843 64.7%
Ests est.fasta 188872116 187615403 99.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1414 1191
transcript 1399 1180
exon 1285 1078
intron 172 92
protein length (aa) 434 360
exons per gene 1.09 1
# of gene models 4743


Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.