Info • Wilcoxina mikolae CBS 423.85 v1.0

Status

Assembly v1 (April 2013) is a standard draft assembly of Solexa gDNA reads. A total of 1604 scaffolds and 117.3 Mbp were assembled using AllPathsLG.

Summary statistics for the Wilcoxina mikolae CBS 423.85 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 117.29
Sequencing read coverage depth 95.0x
# of contigs 5591
# of scaffolds 1604
# of scaffolds >= 2Kbp 1268
Scaffold N50 67
Scaffold L50 (Mbp) 0.48
# of gaps 3987
% of scaffold length in gaps 3.5%
Three largest Scaffolds (Mbp) 2.67, 2.29, 1.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 83292 71558 85.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1559 1254
transcript 1351 1078
exon 417 264
intron 95 59
description:
protein length (aa) 393 304
exons per gene 3.24 3
# of gene models 13093


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.