Info • Xanthophyllomyces dendrorhous UBV-AX4 v1.0

Status

[June 2020] The Xanthophyllomyces dendrorhous UBV-AX4 genome was not sequenced by the JGI. The assembly was provided by Eric Young and it was annotated using the JGI Fungal Annotation Pipeline. For generation of this assembly, Nanopore sequencing was conducted on the Oxford Nanopore Technologies MinION and Illumina sequencing was conducted on the Illumina iSeq 100. Genome assembly and polishing was then done using the Prymetime software package.

Summary statistics for the Xanthophyllomyces dendrorhous UBV-AX4 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.51
Sequencing read coverage depth 26x
# of contigs 16
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 5
Scaffold L50 (Mbp) 1.84
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.41, 2.36, 2.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 191343425 189910224 99.3%
Other Trinity_assembled_Illumina_transcriptome 42385 37027 87.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2466 2144
transcript 1752 1500
exon 224 132
intron 107 95
description:
protein length (aa) 499 407
exons per gene 7.83 6
# of gene models 6424


Collaborators

  • Eric Young, Worchester Polytechnic Institute, Worchester, MA

Funding

This project was not sequenced at the JGI.